Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybbWPermease for cytosine/purine, uracil, thiamine, allantoin family protein. (496 aa)    
Predicted Functional Partners:
DM82_1671
asp/Glu/Hydantoin racemase family protein.
 
     0.954
uraD
UHCUDC: OHCU decarboxylase.
     
 0.624
ygfU
Putative purine permease ygfU.
 
  
 0.621
DM82_1670
Polysaccharide deacetylase family protein.
 
     0.613
pbuX
pbuX: xanthine permease family protein.
 
  
 0.538
pyrC
Dihydroorotase; Multifunctional complex type domain protein; pyrC_multi: dihydroorotase, multifunctional complex type domain protein.
  
  
 0.535
rutG
Putative pyrimidine permease RutG.
 
  
 0.509
ydfH_1
Bacterial regulatory s, gntR family protein.
       0.507
amaB_3
Hydantase: amidase, hydantoinase/carbamoylase family protein.
 
  
 0.438
amaB_4
Hydantase: amidase, hydantoinase/carbamoylase family protein.
 
  
 0.430
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.