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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbWPermease for cytosine/purine, uracil, thiamine, allantoin family protein. (496 aa)    
Predicted Functional Partners:
DM82_1671
asp/Glu/Hydantoin racemase family protein.
 
     0.933
uraD
UHCUDC: OHCU decarboxylase.
     
 0.645
ygfU
Putative purine permease ygfU.
 
  
 0.637
DM82_1670
Polysaccharide deacetylase family protein.
 
     0.610
pbuX
pbuX: xanthine permease family protein.
 
  
 0.557
pyrC
Dihydroorotase; Multifunctional complex type domain protein; pyrC_multi: dihydroorotase, multifunctional complex type domain protein.
  
  
 0.553
rutG
Putative pyrimidine permease RutG.
 
  
 0.530
ydfH_1
Bacterial regulatory s, gntR family protein.
       0.509
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
     
 0.470
alc
Allantoicase: allantoicase; Belongs to the allantoicase family.
  
  
 0.420
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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