Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydfH_1Bacterial regulatory s, gntR family protein. (231 aa)    
Predicted Functional Partners:
mcbR
Bacterial regulatory s, gntR family protein.
  
     0.759
pdhR_3
Bacterial regulatory s, gntR family protein.
 
  
 0.713
DM82_1671
asp/Glu/Hydantoin racemase family protein.
 
     0.711
pdhR_2
Bacterial regulatory s, gntR family protein.
 
  
 0.663
lutR
Bacterial regulatory s, gntR family protein.
 
  
 0.658
uraD
UHCUDC: OHCU decarboxylase.
 
     0.538
DM82_1670
Polysaccharide deacetylase family protein.
 
     0.534
ybbW
Permease for cytosine/purine, uracil, thiamine, allantoin family protein.
       0.507
ilvN
Acolac_sm: acetolactate synthase, small subunit.
   
    0.492
pdhR_4
Bacterial regulatory s, gntR family protein.
 
  
 0.480
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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