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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1702Exonuclease SbcCD, C subunit. (1393 aa)    
Predicted Functional Partners:
DM82_1700
Hypothetical protein.
 
   
 0.955
DM82_1701
Hypothetical protein.
 
     0.954
DM82_1703
Hypothetical protein.
 
     0.954
scpA
scpA/B family protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.752
DM82_4922
Glycosyl transferases group 1 family protein.
 
 
 0.556
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
  
 0.488
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
  
 0.486
DM82_1175
Putative mannosyl-glycoprotein endo-beta-N-acetylglucosamidase.
 
   
 0.483
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.458
dbpA
Hypothetical protein; Helicase conserved C-terminal domain protein; Belongs to the DEAD box helicase family.
  
 0.451
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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