Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_1725Alr0975 protein. (241 aa)    
Predicted Functional Partners:
DM82_1979
Putative membrane protein.
  
 
 0.545
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.477
pcp
Pseudomonalisin.
       0.469
nirK
Cu_nitrite_red: nitrite reductase, copper-containing; Belongs to the multicopper oxidase family.
  
 
 0.448
DM82_4654
NADH:flavin oxidoreductase / NADH oxidase family protein.
   
 
 0.443
fccB_2
FAD dependent oxidoreductase family protein.
   
 
 0.435
fccB_3
FAD dependent oxidoreductase family protein.
   
 
 0.435
gcvT_2
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
   
 
 0.431
DM82_4533
Cytochrome c family protein.
  
 
 0.419
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.401
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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