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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1767UDG_fam4: uracil-DNA glycosylase, 4 family protein. (423 aa)    
Predicted Functional Partners:
yeaZ
T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ.
  
    0.897
rimI
rimI: ribosomal-protein-alanine acetyltransferase.
  
    0.824
DM82_1766
Hypothetical protein.
       0.807
ssb
Single-stranded DNA-binding family protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
   
   0.642
DM82_1770
Acyl CoA binding family protein.
       0.529
gpmA
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.
  
    0.515
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.495
flgC-2
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.495
DM82_3657
Hypothetical protein; Prc: C-terminal processing peptidase family protein; Belongs to the peptidase S41A family.
  
    0.434
DM82_322
rmlD substrate binding domain protein.
 
     0.407
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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