STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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yeaZT6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ. (253 aa)    
Predicted Functional Partners:
DM82_249
T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE.
 
 
 0.984
rimI
rimI: ribosomal-protein-alanine acetyltransferase.
 
 0.963
gcp
tRNA threonylcarbamoyl adenosine modification protein YgjD; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
 
 0.943
DM82_1767
UDG_fam4: uracil-DNA glycosylase, 4 family protein.
  
    0.933
DM82_1766
Hypothetical protein.
 
     0.888
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
 
  
 0.648
birA
birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase.
 
    0.591
DM82_1878
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
     0.575
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
  
 0.569
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.560
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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