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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dehIIHAD_type_II: haloacid dehalogenase, type II. (251 aa)    
Predicted Functional Partners:
DM82_3549
Alpha/beta hydrolase fold family protein.
 
 
 0.931
DM82_4892
Fluoroacetate dehalogenase.
 
 
 0.931
dehII-2
HAD_type_II: haloacid dehalogenase, type II.
  
  
0.921
DM82_1437
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
  0.900
DM82_2746
HAD-SF-IA-v3: HAD hydrolase, IA, variant 3 family protein.
     
  0.900
puuC_1
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
     
  0.900
gabD_1
Aldehyde dehydrogenase family protein.
     
  0.900
aceB
malate_syn_A: malate synthase A; Belongs to the malate synthase family.
     
 0.636
dmlR_7
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
       0.584
DM82_748
Hypothetical protein.
  
     0.458
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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