Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgdS_2Lecithin retinol acyltransferase family protein. (234 aa)    
Predicted Functional Partners:
DM82_3657
Hypothetical protein; Prc: C-terminal processing peptidase family protein; Belongs to the peptidase S41A family.
    
 
 0.654
yejB_1
Binding--dependent transport system inner membrane component family protein.
       0.569
nikE
nickel_nikE: nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily.
       0.555
yejE_1
Binding--dependent transport system inner membrane component family protein.
       0.555
DM82_4366
Phage T7 tail fiber family protein.
 
    0.455
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
  
 0.448
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
  
  
 0.448
dinG_3
Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein.
 
   
 0.439
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
 
   
 0.430
appA
Bacterial extracellular solute-binding s, 5 Middle family protein.
  
    0.410
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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