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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1806Glycosyl transferase 2 family protein. (272 aa)    
Predicted Functional Partners:
DM82_1809
Hypothetical protein.
 
   
 0.642
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.568
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
  
 
 0.564
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.557
cph2_2
GGDEF: diguanylate cyclase domain protein.
  
  
 0.484
cph2_7
GGDEF: diguanylate cyclase domain protein.
  
  
 0.484
cysD_1
Phosphoadenosine phosphosulfate reductase family protein.
       0.483
oatA_1
Acyltransferase family protein.
       0.475
cysK_1
Pyridoxal-phosphate dependent enzyme family protein.
   
 
 0.474
DM82_3894
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase family protein.
  
 
 0.474
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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