STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tauD_1Taurine catabolism dioxygenase TauD, TfdA family protein. (292 aa)    
Predicted Functional Partners:
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein.
 
 
 0.970
ssuB_4
ABC transporter family protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
 
 0.966
ssuD
Alkanesulfonate monooxygenase, FMNH(2)-dependent; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
  0.945
DM82_5695
Binding--dependent transport system inner membrane component family protein.
 
 
 0.938
ssuD_3
Luciferase-like monooxygenase family protein.
 
 
  0.936
tfdA
Taurine catabolism dioxygenase TauD, TfdA family protein.
  
  
 
0.926
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
  
 0.923
ggt
G_glut_trans: gamma-glutamyltransferase.
  
  
  0.918
sir_2
Nitrite and sulphite reductase 4Fe-4S domain protein.
  
  
 0.913
ywrD
Gamma-glutamyltranspeptidase family protein.
  
  
  0.912
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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