Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
lip-1Autotrans_barl: outer membrane autotransporter barrel domain protein. (615 aa)    
Predicted Functional Partners:
DM82_196
GDSL-like Lipase/Acylhydrolase family protein.
  
   
 0.650
DM82_1828
Putative dhha1 domain protein.
       0.509
DM82_2283
Hypothetical protein.
  
     0.506
tag
Methyladenine glycosylase family protein.
  
    0.488
hycE
Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
       0.460
DM82_2282
Origin of replication binding family protein.
  
     0.459
DM82_5127
Autotrans_barl: outer membrane autotransporter barrel domain protein.
      
 0.433
DM82_1654
Hypothetical protein.
  
   
 0.418
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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