close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catD_2Alpha/beta hydrolase fold family protein. (266 aa)    
Predicted Functional Partners:
pcaC
decarb_PcaC: 4-carboxymuconolactone decarboxylase.
  
 0.993
DM82_5108
Carboxymuconolactone decarboxylase family protein.
  
 0.955
catC
Muco_delta: muconolactone delta-isomerase.
 
 
 0.948
pcaJ
3-oxoadipate CoA-transferase subunit B.
  
 
 0.938
pcaI
3-oxoadipate CoA-transferase subunit A.
  
 
 0.934
pcaD
protocat_pcaD: 3-oxoadipate enol-lactonase.
 
  
0.923
DM82_1523
Carboxymuconolactone decarboxylase family protein.
 
  
 0.918
DM82_3985
Putative 4-carboxymuconolactone decarboxylase domain protein.
  
 
 0.918
DM82_4589
Hypothetical protein; acyl-CoA dehydrogenase, N-terminal domain protein.
  
 
 0.815
catA
Catechol_proteo: catechol 1,2-dioxygenase.
 
  
 0.688
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.