STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_188Branched-chain amino acid transport family protein. (107 aa)    
Predicted Functional Partners:
DM82_187
azlC family protein.
 
  
 0.982
ygaZ
azlC family protein.
  
  
 0.787
DM82_181
Hypothetical protein.
 
     0.768
DM82_2119
TM2 domain protein.
  
     0.765
fixL_1
Sensory box protein.
 
     0.723
DM82_1901
Phasin: phasin family domain protein.
  
     0.719
DM82_2619
Barstar family protein.
  
     0.705
DM82_2951
Acetyltransferase family protein.
 
     0.703
DM82_2654
Histone H1-like nucleoHC2 family protein.
  
     0.672
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.648
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.