Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1882Hypothetical protein. (362 aa)    
Predicted Functional Partners:
recJ
recJ: single-stranded-DNA-specific exonuclease RecJ.
       0.851
DM82_185
Zinc-finger domain protein.
  
     0.758
DM82_2684
Hypothetical protein.
  
     0.750
DM82_2704
Gram-negative porin family protein.
  
     0.735
DM82_4028
Gram-negative porin family protein.
  
     0.730
DM82_2199
Gram-negative porin family protein.
  
     0.728
DM82_4871
Gram-negative porin family protein.
  
     0.723
DM82_4800
Gram-negative porin family protein.
  
     0.719
DM82_5943
Sporulation related domain protein.
  
     0.717
DM82_3308
Hypothetical protein.
  
     0.710
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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