STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfkJLow molecular weight phosphotyrosine phosphatase family protein. (159 aa)    
Predicted Functional Partners:
ptp_1
Low molecular weight phosphotyrosine phosphatase family protein.
  
  
 
0.923
wzb
Low molecular weight protein-tyrosine-phosphatase wzb.
  
  
 
0.923
sacC
Hypothetical protein; Glycosyl hydrolases family 32 N-terminal domain protein; Belongs to the glycosyl hydrolase 32 family.
  
 
 0.636
DM82_2447
Eps_transp_fam: exopolysaccharide transport family protein.
 
 
 0.605
DM82_1896
Hypothetical protein.
       0.604
iscR
iscR: iron-sulfur cluster assembly transcription factor IscR.
  
    0.591
wzc
Eps_fam: capsular exopolysaccharide family domain protein.
 
 
 0.589
etk
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
 
 0.588
arsB
Acr3: arsenical-resistance protein.
  
  
 0.574
trxA
Thioredoxin: thioredoxin; Belongs to the thioredoxin family.
 
 
 0.554
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.