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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narX_1HAMP domain protein. (644 aa)    
Predicted Functional Partners:
narL
Bacterial regulatory s, luxR family protein.
 
 0.994
nreC_5
Bacterial regulatory s, luxR family protein.
 
 0.954
narJ
narJ: nitrate reductase molybdenum cofactor assembly chaperone.
 
   
 0.813
narI
narI: respiratory nitrate reductase, gamma subunit.
 
   
 0.781
narG
narG: nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.682
narT_1
Major Facilitator Superfamily protein.
 
  
 0.633
narH
narH: nitrate reductase, beta subunit.
 
  
 0.633
DM82_5326
Major facilitator superfamily MFS_1 domain protein.
 
  
 0.593
uvrY_3
Bacterial regulatory s, luxR family protein.
 
 0.572
narK
2A0108: nitrite transporter family protein.
 
  
 0.571
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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