STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_196GDSL-like Lipase/Acylhydrolase family protein. (379 aa)    
Predicted Functional Partners:
gspL
typeII_sec_gspL: type II secretion system protein L.
  
     0.702
DM82_5951
Putative transmembrane protein.
  
     0.666
lip-1
Autotrans_barl: outer membrane autotransporter barrel domain protein.
  
   
 0.663
epsM
Type II secretion system (T2SS), M family protein.
  
     0.658
DM82_1657
Tetratricopeptide repeat family protein.
  
     0.656
DM82_2411
EAL domain protein.
  
     0.642
yebZ
Copper resistance D family protein.
  
     0.615
DM82_3172
Type II secretion system (T2SS), K family protein.
  
   
 0.604
DM82_2329
Polysaccharide biosynthesis family protein.
  
     0.591
DM82_197
Fatty acid hydroxylase superfamily protein.
  
    0.586
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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