STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_197Fatty acid hydroxylase superfamily protein. (305 aa)    
Predicted Functional Partners:
shc
Hopene_cyclase: squalene-hopene cyclase.
   
 
 0.797
hpnD
hpnD: squalene synthase HpnD.
  
 
 0.661
hpnD-2
hpnD: squalene synthase HpnD.
  
 
 0.661
DM82_4236
Squalene/phytoene synthase family protein.
  
 
 0.661
DM82_196
GDSL-like Lipase/Acylhydrolase family protein.
  
    0.586
DM82_5096
yhhN-like family protein.
 
     0.560
cph2_1
GGDEF: diguanylate cyclase domain protein.
  
  
 0.524
DM82_3990
Short chain dehydrogenase family protein.
  
 
 0.519
alkB1
Fatty acid desaturase family protein.
 
  
 0.507
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 
 0.495
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.