STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1972nrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein. (239 aa)    
Predicted Functional Partners:
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase.
 
  
 0.959
DM82_1971
Anaerobic ribonucleoside-triphosphate reductase family protein.
 
  
 0.951
pflB
Pyr_form_ly_1: formate acetyltransferase.
 
  
 0.903
dhaT
Iron-containing alcohol dehydrogenase family protein.
  
  
 0.648
DM82_1975
Peptidase U32 family protein.
 
     0.516
nrdA
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
  
 0.465
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.429
maeB_1
Malic enzyme, NAD binding domain protein.
  
  
 0.416
maeB
NADP-dependent malic enzyme; Belongs to the malic enzymes family.
  
  
 0.416
yhbU
Hypothetical protein.
 
     0.414
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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