STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_1975Peptidase U32 family protein. (295 aa)    
Predicted Functional Partners:
yhbU
Hypothetical protein.
 
 
 0.991
DM82_1974
SCP-2 sterol transfer family protein.
 
  
 0.988
DM82_5461
O-methyltransferase, putative.
  
  
 0.836
DM82_1973
DGC domain protein.
 
    0.822
DM82_1971
Anaerobic ribonucleoside-triphosphate reductase family protein.
 
    0.664
DM82_1979
Putative membrane protein.
 
    0.653
DM82_1982
nnrS family protein.
 
    0.633
DM82_1969
nnrS family protein.
 
    0.607
narH
narH: nitrate reductase, beta subunit.
 
    0.583
nrdD
nrdD: anaerobic ribonucleoside-triphosphate reductase.
 
    0.546
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.