Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_1988Hypothetical protein. (181 aa)    
Predicted Functional Partners:
sufC
sufC: FeS assembly ATPase SufC.
 
  
 0.963
sufS
Cysteine desulfurase, SufS family protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.950
sufD
Hypothetical protein.
 
   
 0.944
sufB
sufB: FeS assembly protein SufB.
 
   
 0.941
nifU_2
SUF_scaf_2: SUF system FeS assembly protein, NifU family.
 
  
 0.941
sufS-2
sufS: cysteine desulfurase, SufS family protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.702
DM82_2945
Phenylacetic acid degradation B.
  
  
 0.636
iscU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
  
 0.601
hmp_4
2Fe-2S iron-sulfur cluster binding domain protein.
  
  
 0.467
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
  
 0.460
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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