STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2011ydjC-like family protein. (295 aa)    
Predicted Functional Partners:
DM82_2012
Radical SAM superfamily protein.
 
   
 0.963
DM82_2010
hpnL: membrane family protein.
 
     0.950
DM82_2013
Glycosyl transferase 2 family protein.
 
   
 0.904
DM82_3505
Glycosyl transferase 2 family protein.
 
   
 0.804
DM82_4150
Glycosyl transferase 2 family protein.
 
   
 0.664
DM82_5585
Hypothetical protein.
 
     0.663
DM82_3504
hpnL: membrane family protein.
 
     0.629
DM82_3987
MMPL family protein.
 
     0.617
DM82_4152
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
   
 0.610
shc
Hopene_cyclase: squalene-hopene cyclase.
 
     0.567
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.