STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2012Radical SAM superfamily protein. (473 aa)    
Predicted Functional Partners:
DM82_2011
ydjC-like family protein.
 
   
 0.963
DM82_2010
hpnL: membrane family protein.
 
    0.948
DM82_4653
V4R domain protein.
  
  
 0.935
DM82_2013
Glycosyl transferase 2 family protein.
 
   
 0.903
DM82_3505
Glycosyl transferase 2 family protein.
 
   
 0.812
DM82_4148
Radical SAM superfamily protein.
 
  
 0.809
DM82_4150
Glycosyl transferase 2 family protein.
 
   
 0.789
shc
Hopene_cyclase: squalene-hopene cyclase.
 
   
 0.785
DM82_5585
Hypothetical protein.
 
     0.778
DM82_3504
hpnL: membrane family protein.
 
    0.762
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.