STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
limBOxido_grp_1: luciferase oxidoreductase, group 1 family protein. (336 aa)    
Predicted Functional Partners:
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
   
 
 0.564
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
   
 
 0.564
DM82_2013
Glycosyl transferase 2 family protein.
       0.560
DM82_2014
Syl transferase, group 2 family domain protein.
       0.560
cmdD_1
AA-adenyl-dom: amino acid adenylation domain protein.
   
 
 0.460
dltA-2
D-ala-DACP-lig: D-alanine--poly(phosphoribitol) ligase, subunit 1.
   
 
 0.459
DM82_6361
AMP-binding enzyme family protein.
   
 
 0.458
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
    0.407
ppsE_2
AMP-binding enzyme family protein.
   
 
 0.405
dhbF_1
AA-adenyl-dom: amino acid adenylation domain protein.
   
 
 0.402
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.