STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_202Carboxypeptidase regulatory-like domain protein. (140 aa)    
Predicted Functional Partners:
DM82_2547
Hypothetical protein.
  
     0.620
DM82_2168
Hypothetical protein.
  
    0.613
DM82_2666
CNP1-like family protein.
  
     0.587
DM82_203
Hypothetical protein.
       0.494
DM82_6122
Hypothetical protein.
  
     0.487
mucD_3
degP_htrA_DO: peptidase Do family protein; Belongs to the peptidase S1C family.
       0.483
DM82_2546
Mce related family protein.
  
     0.463
DM82_204
Carbon monoxide dehydrogenase subunit G family protein.
       0.462
ubiC
Chorismate lyase family protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family.
  
     0.455
DM82_741
Gram-negative porin family protein.
  
     0.438
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.