STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_204Carbon monoxide dehydrogenase subunit G family protein. (242 aa)    
Predicted Functional Partners:
DM82_5951
Putative transmembrane protein.
  
     0.711
DM82_1377
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.710
DM82_436
Hypothetical protein.
  
     0.710
DM82_5934
Polysaccharide biosynthesis family protein.
  
     0.705
yebZ
Copper resistance D family protein.
 
     0.703
DM82_3793
SMP-30/Gluconolaconase/LRE-like region family protein.
  
     0.699
DM82_203
Hypothetical protein.
       0.698
DM82_3964
Initiator Replication family protein.
  
     0.675
oprD
Outer membrane porin, OprD family protein.
  
     0.668
DM82_3766
Transglutaminase-like superfamily protein.
  
     0.659
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.