rnc protein (Burkholderia oklahomensis) - STRING interaction network

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rnc

Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (459 aa)

Predicted Functional Partners:

rplL

0.913

rpsI

0.912

rpsB

0.910

rplS

0.910

rpmF

0.908

rpmA

0.907

rplT

0.905

rplQ

0.903

rplP

0.900

rplD

0.899

Your Current Organism:

Burkholderia oklahomensis

NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rnc	rplD	DM82_2049	DM82_2914	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.899
rnc	rplL	DM82_2049	DM82_2924	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.913
rnc	rplP	DM82_2049	DM82_2908	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.900
rnc	rplQ	DM82_2049	DM82_2888	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	L17: ribosomal protein L17.	0.903
rnc	rplS	DM82_2049	DM82_2114	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.910
rnc	rplT	DM82_2049	DM82_1004	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.905
rnc	rpmA	DM82_2049	DM82_2669	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.907
rnc	rpmF	DM82_2049	DM82_2064	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.908
rnc	rpsB	DM82_2049	DM82_1743	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.910
rnc	rpsI	DM82_2049	DM82_2577	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal S9/S16 family protein; Belongs to the universal ribosomal protein uS9 family.	0.912
rplD	rnc	DM82_2914	DM82_2049	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.899
rplD	rplL	DM82_2914	DM82_2924	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.994
rplD	rplP	DM82_2914	DM82_2908	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.999
rplD	rplQ	DM82_2914	DM82_2888	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	L17: ribosomal protein L17.	0.995
rplD	rplS	DM82_2914	DM82_2114	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.991
rplD	rplT	DM82_2914	DM82_1004	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplD	rpmA	DM82_2914	DM82_2669	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.990
rplD	rpmF	DM82_2914	DM82_2064	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.988
rplD	rpsB	DM82_2914	DM82_1743	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.998
rplD	rpsI	DM82_2914	DM82_2577	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Ribosomal S9/S16 family protein; Belongs to the universal ribosomal protein uS9 family.	0.994

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