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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mucD_2degP_htrA_DO: peptidase Do family protein; Belongs to the peptidase S1C family. (502 aa)    
Predicted Functional Partners:
DM82_2055
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
  
 
 0.944
mucD_1
PDZ domain protein.
  
  
 
0.916
mucD_3
degP_htrA_DO: peptidase Do family protein; Belongs to the peptidase S1C family.
  
  
 
0.906
rseB
mucB/RseB family protein.
  
  
 0.822
DM82_2052
Hypothetical protein.
  
   0.818
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.746
DM82_1150
Hypothetical protein.
  
 0.670
lepB
sigpep_I_bact: signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.668
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
     
 0.586
DM82_1577
Ankyrin repeat family protein.
  
 0.579
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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