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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2055Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein. (204 aa)    
Predicted Functional Partners:
rseB
mucB/RseB family protein.
 
 0.999
mucD_2
degP_htrA_DO: peptidase Do family protein; Belongs to the peptidase S1C family.
  
 
 0.944
rpoE
rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
 0.929
DM82_1258
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 0.861
sigM
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 0.849
rpoE_3
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 0.836
DM82_3970
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 0.836
cnrH
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 0.836
fecI
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 0.836
DM82_555
sigX4: RNA polymerase sigma-70 factor, TIGR02957 family protein.
  
 0.836
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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