DM82_2065 protein (Burkholderia oklahomensis)

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Score

DM82_2065

Hypothetical protein. (210 aa)

Predicted Functional Partners:

rpmF

0.975

rpsC

0.936

rpsP

0.898

rplD

0.898

rpsF

0.896

rpsB

0.892

rimM

0.892

priB

0.891

infC

0.890

trmD

0.887

Your Current Organism:

Burkholderia oklahomensis

NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM82_2065	infC	DM82_2065	DM82_1001	Hypothetical protein.	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.890
DM82_2065	priB	DM82_2065	DM82_1558	Hypothetical protein.	Putative primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.	0.891
DM82_2065	rimM	DM82_2065	DM82_2116	Hypothetical protein.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.892
DM82_2065	rplD	DM82_2065	DM82_2914	Hypothetical protein.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.898
DM82_2065	rpmF	DM82_2065	DM82_2064	Hypothetical protein.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.975
DM82_2065	rpsB	DM82_2065	DM82_1743	Hypothetical protein.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.892
DM82_2065	rpsC	DM82_2065	DM82_2909	Hypothetical protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.936
DM82_2065	rpsF	DM82_2065	DM82_1559	Hypothetical protein.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.896
DM82_2065	rpsP	DM82_2065	DM82_2117	Hypothetical protein.	S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.898
DM82_2065	trmD	DM82_2065	DM82_2115	Hypothetical protein.	tRNA (guanine(37)-N(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.887
infC	DM82_2065	DM82_1001	DM82_2065	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Hypothetical protein.	0.890
infC	rimM	DM82_1001	DM82_2116	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.538
infC	rplD	DM82_1001	DM82_2914	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.930
infC	rpmF	DM82_1001	DM82_2064	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.922
infC	rpsB	DM82_1001	DM82_1743	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.992
infC	rpsC	DM82_1001	DM82_2909	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.990
infC	rpsF	DM82_1001	DM82_1559	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.988
infC	rpsP	DM82_1001	DM82_2117	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	S16: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.953
infC	trmD	DM82_1001	DM82_2115	Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	tRNA (guanine(37)-N(1))-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.667
priB	DM82_2065	DM82_1558	DM82_2065	Putative primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.	Hypothetical protein.	0.891

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