STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acrB_22A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein. (1066 aa)    
Predicted Functional Partners:
mexA
Multidrug resistance protein mexA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.997
oprM
Outer membrane protein oprM.
 0.991
mexA_1
RND_mfp: efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.976
oprM-3
Outer membrane protein oprM.
 0.962
oprM-2
Outer membrane protein oprM.
 0.960
oprM_10
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 0.959
oprM_1
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein.
 0.958
oprM_3
Outer membrane efflux family protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
 0.927
tolC
Outer membrane efflux family protein.
  
 0.927
acrB_1
2A0602: RND transporter, hydrophobe/amphiphile efflux-1 family protein.
  
  
 
0.903
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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