Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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DM82_20834Fe-4S binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
nuoE-2
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
   
 
 0.728
nuoE
nuoE_fam: NADH-quinone oxidoreductase, E subunit.
   
 
 0.728
fadH_1
NADH:flavin oxidoreductase / NADH oxidase family protein.
   
 
 0.649
fadH_2
NADH:flavin oxidoreductase / NADH oxidase family protein.
   
 
 0.649
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.629
narB_2
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.622
gltD
Glutamate synthase, NADH/NADPH, small subunit domain protein.
   
 
 0.621
DM82_2155
Fdh-alpha: formate dehydrogenase, alpha subunit.
   
 
 0.541
narB_1
Molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
   
 
 0.541
DM82_5894
formate-DH-alph: formate dehydrogenase, alpha subunit.
   
 
 0.541
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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