Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DM82_2113Acetyltransferase family protein. (197 aa)    
Predicted Functional Partners:
DM82_3216
Hypothetical protein.
  
     0.670
DM82_5374
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD.
  
     0.635
DM82_5488
Putative transmembrane protein.
  
     0.623
pcp
Pseudomonalisin.
  
     0.542
invG_2
type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family.
 
     0.496
DM82_4850
Hypothetical protein.
  
     0.476
plcA_1
Phosphoesterase family protein.
  
     0.456
DM82_4997
Collagenase family protein.
 
     0.453
pcp-2
Pseudomonalisin.
  
     0.446
DM82_2744
Hypothetical protein.
  
     0.430
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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