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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metQ_1Lipo, YaeC family protein. (264 aa)    
Predicted Functional Partners:
metI
Binding--dependent transport system inner membrane component family protein.
 0.997
metN_1
ABC transporter family protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.997
metP
Binding--dependent transport system inner membrane component family protein.
 0.995
metN_2
ABC transporter family protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.994
mdeA_2
OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein.
  
    0.542
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
  
 0.499
cysC-2
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
   
  
 0.499
sbp_1
3a0106s03: sulfate ABC transporter, sulfate-binding family protein.
   
 
 0.471
sbp_2
3a0106s03: sulfate ABC transporter, sulfate-binding family protein.
   
 
 0.471
lptB_4
ABC transporter family protein.
   
 
  0.468
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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