Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
mntBABC 3 transport family protein. (263 aa)    
Predicted Functional Partners:
psaA
Periplasmic solute binding family protein; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.996
znuC
ABC transporter family protein.
 
   
 0.965
zur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.792
fur
Ferric uptake regulator family protein; Belongs to the Fur family.
  
  
 0.550
rpmE
L31: ribosomal protein L31.
  
  
 0.537
DM82_5135
Putative DNA-binding domain protein.
  
  
 0.526
artM_3
HEQRo_perm_3TM: amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein.
    
 0.498
DM82_4193
Hypothetical protein.
 
   
 0.495
lptB_4
ABC transporter family protein.
     
 0.492
choW
ABC_choXWV_perm: choline ABC transporter, permease protein.
     
 0.488
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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