Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_2155Fdh-alpha: formate dehydrogenase, alpha subunit. (982 aa)    
Predicted Functional Partners:
nuoE-2
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
 0.999
nqo1_1
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein.
 
 0.999
DM82_2156
NADH-dependent formate dehydrogenase delta subunit FdsD family protein.
 
 0.999
fdoI
formate-DH-gamm: formate dehydrogenase, gamma subunit.
  
 
 0.965
fdxH
FDH-beta: formate dehydrogenase, beta subunit.
  
 
 0.956
hycE
Respiratory-chain NADH dehydrogenase, 30 Kd subunit.
  
 
 0.934
DM82_5895
TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
 
 0.921
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.906
fmdA
Formamidase.
     
 0.902
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
    
  0.901
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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