Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pcpB_1FAD binding domain protein. (548 aa)    
Predicted Functional Partners:
xlnD
Squalene epoxidase family protein.
  
   
 0.642
blaB1
Metallo-beta-lactamase superfamily protein.
 
    0.580
yrrB
Tetratricopeptide repeat family protein.
       0.538
DM82_5103
Hypothetical protein; uvrD-like helicase C-terminal domain protein.
  
     0.510
oxdD
Oxalate decarboxylase oxdD.
 
     0.477
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 
 0.473
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
 
 
 0.442
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
 
 
 0.438
ubiB
2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.
   
 0.434
DM82_505
Chromate transporter family protein.
  
     0.433
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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