Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_2160Peptidase C26 family protein. (449 aa)    
Predicted Functional Partners:
ybdK
Carboxylate-amine ligase YbdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
     0.594
puuB_4
FAD binding domain protein.
 
  
 0.567
puuB_5
FAD dependent oxidoreductase family protein.
 
  
 0.550
puuA_2
Glutamine synthetase, catalytic domain protein.
 
  
 0.546
puuA_1
Glutamine synthetase, catalytic domain protein.
 
  
 0.545
puuB_2
FAD binding domain protein.
 
  
 0.536
DM82_5000
Helix-turn-helix family protein.
 
  
 0.499
puuR_2
Helix-turn-helix family protein.
 
  
 0.483
puuR_3
Helix-turn-helix family protein.
 
  
 0.480
puuB_1
FAD binding domain protein.
 
  
 0.472
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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