STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioC_2ubiE/COQ5 methyltransferase family protein. (227 aa)    
Predicted Functional Partners:
yabJ_1
Endoribonuclease L-PSP family protein.
       0.723
proC_1
NADP oxidoreductase coenzyme F420-dependent family protein.
       0.701
DM82_2178
eamA-like transporter family protein.
       0.697
DM82_5274
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
     0.561
DM82_5369
Carnitine_bodg: gamma-butyrobetaine hydroxylase.
 
    0.525
DM82_5272
Taurine catabolism dioxygenase TauD, TfdA family protein.
 
    0.482
DM82_2762
Hypothetical protein.
  
     0.472
soxA_2
FAD dependent oxidoreductase family protein.
  
     0.439
DM82_3400
phytanoyl-CoA dioxygenase family protein.
 
  
 0.402
gatm
Glycine amidinotransferase, mitochondrial.
  
     0.401
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.