STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_22FHA domain protein. (336 aa)    
Predicted Functional Partners:
prkC
Tyrosine kinase family protein.
 
 
 
 0.932
DM82_4510
Pectinacetylesterase family protein.
  
    0.772
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
    
 
 0.740
DM82_883
Hypothetical protein.
 
   
 0.735
DM82_4667
Peptidase propeptide and YPEB domain protein.
  
     0.711
DM82_2571
parB-like nuclease family protein.
  
     0.704
DM82_6201
BNR repeat-like domain protein.
  
     0.696
DM82_24
RNP_Burkhold: ribosomal natural product, two-chain TOMM family protein.
       0.677
DM82_25
RNP_Burkhold: ribosomal natural product, two-chain TOMM family protein.
       0.677
DM82_4224
Hypothetical protein.
  
     0.668
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.