Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
papD_2Hypothetical protein; Pili and flagellar-assembly chaperone, PapD N-terminal domain protein. (250 aa)    
Predicted Functional Partners:
fimD_3
Outer membrane usher family protein.
 
 
 0.968
fimD_1
Outer membrane usher family protein.
 
 
 0.934
DM82_2222
Spore Coat Protein U domain protein.
 
 
 0.916
fimA_2
Fimbrial family protein.
 
 
 0.899
DM82_441
Spore Coat Protein U domain protein.
 
 
 0.839
fimD_2
papC N-terminal domain protein.
 
 
 0.827
papC
papC N-terminal domain protein.
 
 
 0.805
DM82_915
Spore Coat Protein U domain protein.
 
 
 0.706
DM82_330
Methyltransferase domain protein.
  
     0.704
DM82_329
Major Facilitator Superfamily protein.
  
     0.694
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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