STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjP_1Binding--dependent transport system inner membrane component family protein. (285 aa)    
Predicted Functional Partners:
ugpA_1
Binding--dependent transport system inner membrane component family protein.
 
 0.997
DM82_2240
Putative sugar-binding periplasmic protein.
 
 0.995
ugpC_1
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 0.992
ugpC_3
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 0.977
ugpC_4
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 0.976
ycjO_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.908
ycjO_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.905
malK
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 
 0.893
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 
 0.884
ycjO_1
Binding--dependent transport system inner membrane component family protein.
 
 
 0.882
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.