Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DM82_2240Putative sugar-binding periplasmic protein. (415 aa)    
Predicted Functional Partners:
ycjP_1
Binding--dependent transport system inner membrane component family protein.
 
 0.995
ugpA_1
Binding--dependent transport system inner membrane component family protein.
 
 0.990
ugpC_1
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 0.973
ugpC_3
ABC transporter family protein; Belongs to the ABC transporter superfamily.
  
 0.928
ugpC_4
ABC transporter family protein; Belongs to the ABC transporter superfamily.
  
 0.928
ycjP_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.741
ycjP_5
Binding--dependent transport system inner membrane component family protein.
 
 
 0.724
ycjO_2
Binding--dependent transport system inner membrane component family protein.
 
 
 0.714
ycjO_1
Binding--dependent transport system inner membrane component family protein.
 
 
 0.710
ycjO_3
Binding--dependent transport system inner membrane component family protein.
 
 
 0.707
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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