STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2263Transglycosylase SLT domain protein. (369 aa)    
Predicted Functional Partners:
DM82_3300
Thioredoxin family protein.
  
     0.768
DM82_1514
Putative membrane protein.
  
    0.763
DM82_6051
Putative membrane protein.
  
     0.763
DM82_617
Putative lipoprotein transmembrane.
  
   
 0.755
DM82_2619
Barstar family protein.
  
     0.753
DM82_4871
Gram-negative porin family protein.
  
     0.737
DM82_4288
Gram-negative porin family protein.
  
     0.734
DM82_2199
Gram-negative porin family protein.
  
     0.733
priB
Putative primosomal replication protein n; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family.
  
     0.730
DM82_741
Gram-negative porin family protein.
  
     0.729
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.