STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBxylB: xylulokinase. (493 aa)    
Predicted Functional Partners:
mtlK
Mannitol dehydrogenase Rossmann domain protein.
 
 
 0.978
rpe
Rpe: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.928
DM82_5405
D-xylulose reductase.
 
 
 0.923
lsrR_1
Putative sugar-binding domain protein.
 
  
 0.819
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.634
DM82_1408
Xylose isomerase-like TIM barrel family protein.
  
 
 0.609
gutB_1
Zinc-binding dehydrogenase family protein.
  
 
 0.550
gutB_3
Zinc-binding dehydrogenase family protein.
  
 
 0.550
gntT
gntP: transporter, gluconate:H+ symporter family protein.
 
  
 0.508
mtnB
Hypothetical protein; Class II Aldolase and Adducin N-terminal domain protein.
 
  
 0.481
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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