Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2282Origin of replication binding family protein. (515 aa)    
Predicted Functional Partners:
DM82_2283
Hypothetical protein.
 
     0.900
DM82_6103
O-antigen ligase like membrane family protein.
  
     0.640
DM82_429
Hypothetical protein.
  
     0.619
DM82_81
Nitr_red_assoc: conserved hypothetical family protein.
  
     0.617
DM82_1480
Phosphoribosyl transferase domain protein.
  
     0.613
kfoC
Glycosyl transferase 2 family protein.
  
     0.583
ppsA_2
Asl1650 protein.
  
     0.567
DM82_1376
Hypothetical protein.
  
     0.554
DM82_1381
Hypothetical protein.
  
     0.549
DM82_2281
Hypothetical protein.
       0.533
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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