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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_2299SIR2-like domain protein. (476 aa)    
Predicted Functional Partners:
DM82_5083
Universal stress family protein.
  
     0.689
DM82_1626
Major Facilitator Superfamily protein.
  
     0.629
DM82_883
Hypothetical protein.
  
     0.564
DM82_4510
Pectinacetylesterase family protein.
  
     0.550
rna
Ribonuclease T2 family protein; Belongs to the RNase T2 family.
  
     0.548
DM82_1624
Sigma-70, region 4 family protein.
  
     0.541
DM82_4224
Hypothetical protein.
  
     0.534
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.520
DM82_161
Putative peptidoglycan-binding domain 1 protein.
  
     0.508
DM82_4667
Peptidase propeptide and YPEB domain protein.
  
     0.495
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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