Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
urtBurea_trans_UrtB: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family. (542 aa)    
Predicted Functional Partners:
urtC
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
urtD
urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD.
 
 
 0.996
urtE
urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE.
 
 
 0.996
amiC_1
Periplasmic binding domain protein.
 
 
 0.994
urtC-2
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.981
amiC_3
Periplasmic binding domain protein.
 
 
 0.974
urtE-2
urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE.
 
 
 0.971
urtD-2
urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD.
 
 
 0.966
urtB-2
urea_trans_UrtB: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.911
lptB_2
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.904
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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