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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureEHypothetical protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. (217 aa)    
Predicted Functional Partners:
ureF
ureF family protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 0.998
ureC
Urease_alph: urease, alpha subunit.
 
  
 0.995
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.995
ureB
Urease_beta: urease, beta subunit; Belongs to the urease beta subunit family.
 
  
 0.988
ureA
Urease_gam: urease, gamma subunit; Belongs to the urease gamma subunit family.
 
  
 0.984
ureD
ureD urease accessory family protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
  
 0.943
amiC_1
Periplasmic binding domain protein.
 
   
 0.598
urtC
urea_trans_UrtC: urea ABC transporter, permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.573
urtB
urea_trans_UrtB: urea ABC transporter, permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.551
urtD
urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD.
 
   
 0.544
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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