Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rfaC-2heptsyl_trn_I: lipopolysaccharide heptosyltransferase I. (331 aa)    
Predicted Functional Partners:
rfaF
heptsyl_trn_II: lipopolysaccharide heptosyltransferase II.
 
 0.991
waaA
Glycosyl transferases group 1 family protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.990
DM82_4504
Glycosyltransferase 9 family protein.
 
 
 0.986
rfaQ
heptsyl_trn_III: putative lipopolysaccharide heptosyltransferase III.
  
  
 
0.929
rfaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
  
  
 
0.917
DM82_2326
3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase family protein.
     
 0.854
DM82_4505
Glycosyltransferase 9 family protein.
 
  
 0.831
rfaE
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I.
 
   
 0.823
rfaE-2
Bifunctional protein RfaE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
   
 0.822
gmhB
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
   
 0.778
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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